(Eric) Zhang Chen

I’m a Senior Expert Research Scientist at UII America. I previously worked as data scientists at Thomas Jefferson University Hospital and Dana-Farber Cancer Institute. My work involves devleloping deep learning modesls for Electronic Health Records (EHR), medical images, clinical text as well as hospital operational data. I received my Ph.D. in Bioinformatics from University of Pennsylvania. I have over 50 publications with over 5000 citations.

I’m also interested in financial investments and passed the CFA (Chartered Financial Analyst) Level 1 exam.

Interests

LLM
Deep Learning
Biostatistics
Biomedical image
Genomics
EHR

Education

PhD in Bioinformatics, 2016

University of Pennsylvania, USA
MPhil in Bioinformatics, 2011

The Chinese University of Hong Kong, Hong Kong
BS in Biology, 2008

University of Science and Technology of China, China

Publications

More Publications

Chen EZ, Dong X, Wu J, Jiang H, Li X, Rong R. Lesion attributes segmentation for melanoma detection with multi-task U-Net. IEEE International Symposium on Biomedical Imaging (ISBI), 2019.

PDF Code

Li X, Wu J, Jiang H, Chen EZ, Dong X, Rong R. Skin lesion classification via combining deep learning features and clinical criteria representations. bioRxiv, 2018.

PDF

Jiang H, Rong R, Wu J, Li X, Dong X, Chen EZ. Skin lesion segmentation with improved C-UNet networks. bioRxiv, 2018.

PDF

Wu J, Li X, Chen EZ, Jiang H, Dong X, Rong R. What evidence does deep learning model use to classify skin lesions?. arXiv, 2018.

PDF

Chen EZ, Bushman FD, Li H. A model-based approach for species abundance quantification based on shotgun metagenomic data. Statistics in Biosciences, 2017.

PDF Code

Ni J, Shen TC, Chen EZ, Bittinger K, Bailey A, Roggiani M, Sirota-Madi A, Friedman ES, Chau L, Lin A, Nissim I. A role for bacterial urease in gut dysbiosis and Crohn’s disease. Science Translational Medicine, 2017.

PDF

Chen EZ, Li H. A two-part mixed-effects model for analyzing longitudinal microbiome compositional data. Bioinformatics, 2016.

PDF Code

Lee D, Baldassano RN, Otley AR, Albenberg L, Griffiths AM, Compher C, Chen EZ, Li H, Gilroy E, Nessel L, Grant A, Chehoud C, Bushman FD, Wu GD, Lewis JD. Comparative effectiveness of nutritional and biological therapy in north american children with active Crohnʼs disease. Inflammatory Bowel Diseases, 2015.

PDF

Oh J, Sanders IF, Chen EZ, Li H, Tobias JW, Isett RB, Penubarthi S, Sun H, Baldwin DA, Fraser NW. Genome wide nucleosome mapping for HSV-1 shows nucleosomes are deposited at preferred positions during lytic infection. PLoS ONE, 2015.

PDF

Lewis JD, Chen EZ, Baldassano RN, Otley AR, Griffiths AM, Lee D, Bittinger K, Bailey A, Friedman ES, Hoffmann C, Albenberg L, Sinha R, Compher C, Gilroy E, Nessel L, Grant A, Chehoud C, Li H, Wu GD, Bushman FD. Inflammation, antibiotics, and diet as environmental stressors of the gut microbiome in pediatric Crohn’s disease. Cell Host Microbe, 2015.

PDF Code

(Eric) Zhang Chen

Interests

Education

Experience

Senior Expert Research Scientist

UII America

Expert Research Scientist

UII America

Data Scientist

Dana-Farber Cancer Institute

Data Scientist

Thomas Jefferson Hospital

Publications

Posts